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Biosecurity Research Institute


2017 Research Publications
(Listed alphabetically by first author)

Channaiah, L.H., Michael, M., Acuff, J.C., Phebus, R.K., Thippareddi, H., Olewnik, M., Miliken, G. (2017). Validation of the baking process as a kill-step for controlling Salmonella in muffins. International Journal of Food Microbiology June 5; 250:1-6. {PubMed}

Dekkers, J., Rowland, R.R., Lunney, J.K., Plastow, G. (2017). Host genetics of response to porcine reproductive and respiratory syndrome in nursery pigs. Veterinary Microbiology September; 209:107-113. {PubMed

Dunkelberger, J.R., Serão, N.V., Niederwerder, M.C., Kerrigan, M.A., Lunney, J.K., Rowland, R.R., Dekkers, J.C. (2017). Effect of a major quantitative trait locus for porcine reproductive and respiratory syndrome (PRRS) resistance on response to coinfection with PRRS virus and porcine circovirus type 2b (PCV2b) in commercial pigs, with or without prior vaccination for PRRS. Journal of Animal Science February; 95(2):584-598. {PubMed}

Dunkelberger, J.R., Serao, N.V.L., Weng, Z., Waide, E.H., Niederwerder, MC., Kerrigan, M.A., Lunney, J.K., Rowland, R.R.R., Dekkers, J.C.M. (2017). Genomic regions associated with host response to porcine reproductive and respiratory syndrome vaccination and coinfection in nursery pigs. BMC Genomics November 13; 18(1)865. {Pub Med}

Faburay, B., LaBeaud, A.D., McVey, D.S., Wilson, W.C., Richt, J.A. (2017). Current status of rift valley fever vaccine development. Vaccines September; 5(3):29. {Pub Med}

Farman, M., Peterson, G., Chen, L., Starnes, J., Valent, B., Bachi, P., Murdock, L., Hershman, D., Pedley, K., Fernandes, J.M., Bavaresco, J. (2017). The Lolium Pathotype of Magnaporthe oryzae Recovered from a Single Blasted Wheat Plant in the United States. Plant Dis. 2017 May101(5):684-692. doi:1094/PDIS-05-16-0700-RE.Epub 2017 Feb. 27. {PubMed}

Gong, W., Jia, J., Zhang, B., Mi, S., Zhang, L., Xie, X., Guo, H., Shi, J., Tu, C. (2017). Serum metabolomic profiling of piglets infected with virulent classical swine fever virus. Frontiers in Microbiology April 27; 8:731. {PubMed}

Herrera-Ibata’, D.M., Martínez-López, B., Quijada,  D., Burton, K., Mur, L., (2017). Quantitative approach for the risk assessment of African swine fever and Classical swine fever introduction into the United States through legal imports of pigs and swine products. PLoS One. 2017 Aug 10;12(8):e0182850. doi: 10.1371/journal.pone.0182850.eCollections 2017.  {PubMed} Erratum in: PLoS One. 2018 Nov 20;13(11):e0208065. doi: 10.1371/journal.pone.0208065. eCollection 2018.

Higgs, S., Walker, P.F., Goraleski, K.A. (2017). Perspective piece: Clara Southmayd Ludlow: Her thirst for knowledge was positively inspirational: Honoring a female giant in tropical medicine. American Journal of Tropical Medicine and Hygiene; 97(6):1638-1639.

Huang, Y.S., Higgs, S., Vanlandingham, D.L. (2017). Biological control strategies for mosquito vectors of arboviruses. Insects February 10; 8(1). {PubMed}

Ikegami, T., Balogh, A., Nishiyama, S., Lokugamage, N., Saito, T.A., Morrill, J.C., Shivanna, V., Indran, S.V., Zhang, L., Smith, J.K., Perez, D., Juelich, T.L., Morozov, I., Wilson, W.C., Freiberg, A.N., Richt, J.A. (2017). Distinct virulence of Rift Valley fever phlebovirus strains from different genetic lineages in a mouse model. PLoS ONE 2017 December 21; 12(12):e0189250 doi: 10.1371/journal.pone.0189250. eCollection 2017.{Pub Med

Inoue, Y., Vy T.T.P., Yoshida, K., Asano, H., Mitsuoka, C., Asuke, S., Anh, V.L.,. Cumagun, C.J.R., Chuma, I., Terauchi, R., Kato, K., Mitchell, T., Valent, B., Farman, M., Tosa, Y. (2017).  Evolution of the wheat blast fungus through functional losses in a host specificity determinant. Science. 2017 Jul 7;357)6346):80-83. doi: 10.1126/science.aam9654 {Science}

Lee, J., Yu, H., Li, Y., Ma, J., Lang, Y., Duff, M., Henningson, J., Liu, Q., Li, Y., Nagy, A., Bawa, B., Li, Z., Tong, G., Richt, J.A., Ma, W. (2017). Impacts of different expressions of PA-X protein on 2009 pandemic H1N1 virus replication pathogenicity and host immune responses. Virology April; 504:25-35. {PubMed

Li, P., Eckels, S.J. (2017). Measurements and numerical simulations of heat transfer and pressure drop in a duct with smooth walls. ASME International Mechanical Engineering Congress and Exposition Proceedings (IMECE); 8.

Lough, G., Rashidi, H., Kyriazakis, I., Dekkers, J.C.M., Hess, A., Hess, M., Deeb, N., Kause, A., Lunney, J.K., Rowland, R.R.R., Mulder, H.A., Doeschl-Wilson, A. (2017). Use of multi-trait and random regression models to identify genetic variation in tolerance to porcine reproductive and respiratory syndrome virus. Genetics Selection Evolution April 19; 49(1):37. {PubMed}

Ma, J., Lee, J., Liu, H., Mena, I., Davis, A.S., Sunwoo, S.Y., Lang, Y., Duff, M., Morozov, I., Li, Y., Yang, J., Garcia-Sastre, A., Richt, J.A., Ma, W. (2017). Newcastle disease virus-based H5 influenza vaccine protects chickens from lethal challenge with a highly pathogenic H5N2 avian influenza virus. NPJ Vaccines December 4; 2:33. {Pub Med}

Mancera Gracia, J.C., Van den Hoecke, S., Richt, J.A., Ma, W., Saelens, X., Van Reeth, K. (2017). A reassortant H9N2 influenza virus containing 2009 pandemic H1N1 internal-protein genes acquired enhanced pig-to-pig transmission after serial passages in swine. Sci Rep. May 2; 7(1):1323. {PubMed}

Mann, G.W., Eckels, S.J. (2017). Focal plane model for flat refractive geometry. Journal of the European Optical Society; 13(1):39.

Michelmore, R., Coaker, G., Bart, R., Beattie, G., Bent, A., Bruce, T., Cameron D., Dangl, J., Dinesh-Kumar, S., Edwards, R., Eves-van den Akker, S., Gassmann, W., Greenberg, J.T., Hanley-Bowdoin, L., Harrison R.J., Harvey, J., He, P., Huffaker, A., Hulbert, S., Innes, R., Jones, J.D.G., Kaloshian, I., Kamoun, S., Katagiri, F., Leach, J., Ma, W, McDowell, J., Medford, J., Meyers, B., Nelson, R., Oliver, R., Qi, Y., Saunders, D., Shaw, M., Smart, C., Subudhi, P., Torrance, L., Tyler, B., Valent, B., Walsh, J. (2017).Foundational and Translational Research Opportunities to Improve Plant Health. Mol Plant Microbe Interact 2017 Jul:30(7):515-516. doi: 10.1094/MPMI-01-17-0010-CR. Epub 2017 June 12. {PubMed}

Miller, J., Burton, K., Fund, J., Self, A. (2017). Process Review for Development of Quantitative Risk Analyses for Transboundary Animal Disease to Pathogen-Free Territories. Biores Open Access. 2017 Oct 1;6(1):133-140.  doi: 10.1089/biores.2016.0046. eCollection 2017. {PubMed}

Noronha, L.E., Wilson, W.C. (2017). Comparison of two zoonotic viruses from the order Bunyavirales. Current Opinion in Virology December; 27:36-41. {Pub Med}

Oo, A., Rausalu, K., Merits, A., Higgs, S., Vanlandingham, D., Bakar, S.A., Zandi, K. (2017). Deciphering the potential of baicalin as an antiviral agent for Chikungunya virus infection. Antiviral Research February; 150:101-111. {PubMed}

Osuna, C.E., Lim, S.Y., Deleage, C., Griffin, B.D., Stein, D., Schroeder, L.T., Omage, R., Best, K., Luo, M., Hraber, P.T., Andersen-Elyard, H., Ojeda E.F., Huang, S., Vanlandingham, D.L., Higgs, S., Perelson, A.S., Estes, J.D., Safronetz, D., Lewis, M.G., Whitney, J.B. (2017). Corrigendum: Zika viral dynamics and shedding in rhesus and cynomolgus macaques. Nat Med. February 7; 23(2):264. {PubMed}

Pardi, N., Hogan, M.J., Pelc, R.S., Muramatsu, H., Andersen, H., DeMaso, C.R., Dowd, K.A., Sutherland, L.L., Scearce, R.M., Parks, R., Wagner, W., Granados, A., Greenhouse, J., Walker, M., Willis, E., Yu, J.S., McGee, C.E., Sempowski, G.D., Mui, B.L., Tam, Y.K., Huang, Y.J., Vanlandingham, D., Holmes, V.M., Balachandran, H., Sahu, S., Lifton, M., Higgs, S., Hensley, S.E., Madden, T.D., Hope, M.J., Karikó, K., Santra, S., Graham, B.S., Lewis, M.G., Pierson, T.C., Haynes, B.F., Weissman, D. (2017). Zika virus protection by a single low-dose nucleoside-modified mRNA vaccination. Nature March 9; 543(7644):248-251. {PubMed}

Pieck, M.L., Ruck, A., Farman, M.L., Peterson, G.L., Stack, J.P., Valent, B., Pedley, K.F. (2017). Genomics-based marker discovery and diagnostic assay development for wheat blast. Plant Disease January; 101(1):103-109. {Article}

Popescu, L., Gaudreault, N.N., Whitworth, K.M., Murgia, M.V., Nietfeld, J.C., Mileham, A. Samuel, M., Wells, K.D., Prather, R.S., Rowland, R.R. (2017). Genetically edited pigs lacking CD163 show no resistance following infection with the African swine fever virus isolate, Georgia 2007/1. Virology January 15; 501:102-106. {PubMed}

Popescu, L.N., Trible, B.R., Chen, N., Rowland, R.R.R. (2017). GP5 of porcine reproductive and respiratory syndrome virus (PRRSV) as a target for homologous and broadly neutralizing antibodies. Veterinary Microbiology September; 209:90-96. {Pub Med}

Prather, R.S., Wells, K.D., Whitworth, K.M., Kerrigan, M.A., Samuel, M.S., Mileham, A., Popescu, L.N., Rowland, R.R.R. (2017). Knockout of maternal CD163 protects fetuses from infection with porcine reproductive and respiratory syndrome virus (PRRSV). Scientific Reports October 17; 7(1):13371. {Pub Med}

Revilla, Y., Perez-Nunez, D., Richt, J.A. (2017). African swine fever virus biology and vaccine approaches. Advances in Virus Research; 100:41-74. {Pub Med}

Riad, M.H., Scoglio, C.M., McVey, D.S., Cohnstaedt, L.W. (2017). Estimation of parameters and basic reproductive ratio for Japanese encephalitis transmission in the Philippines using a sequential Monte Carlo filter. 1st Annual IEEE Conference on Control Technology and Applications, CCTA 2017, 2017-January, pp. 668-673.

Rosenthal, P.J., Bausch, D.G., Higgs, S., Rabinovich, N.R., Hill, D.R., Plowe, C.V., Goraleski, K.A., Walker, P.F. (2017). Evidence-based policies on migration and global health are essential to maintain the health of those inside and outside the United States. American Journal of Tropical Medicine and Hygiene 96(1):5-6. PMID: 28077738. {PubMed}

Rowland R. R., Lunney, J. K. (2017). Alternative strategies for the control and elimination of PRRS.Veterinary Microbiology, 209, pp. 1-4.

Sanchez, E.G., Riera, E., Nogal, M., Gallardo, C., Fernández, P., Bello-Morales, R., López-Guerrero, J.A., Chitko-McKown, C.G., Richt, J.A., Revilla, Y.  Phenotyping and susceptibility of established porcine cell lines to Arican Swine Fever Virus infection and viral production.  (2017) Sci Rep. 1027 Sept 4:7(1)10369 doi: 10.1038/s41598-0170-09948-x.  {PubMed}

Schaffer, A.M., Burton, K.R. (2017). Evaluation of State Plans and the Livestock Emergency Response Plan (LERP). 2017 Health Security Volume 15, Number 6 © Mary Ann Liebert, Inc., doi: 10.1089/hs.2017.0018

Stella, J.M., Luchansky, J.B., Miller, K., Shoyer, B.A., Shane, L.E., McGeary, L., Osoria, M., Stahler, L.J., Sevart, N.J., Phebus, R.K., Thippareddi, H., Porto-Fett, A.C.S. (2017). Use of an Electrostatic Spraying System or the Sprayed Lethality in Container Method To Deliver Antimicrobial Agents onto the Surface of Beef Subprimals To Control Shiga Toxin-Producing Escherichia coli.J Food Prot. 2017 Aug;80(8):1393-1400. doi: 10.4315/0362-028X.JFP-16-406. {PubMed}

van den Hurk, A.F., Hall-Mendelin, S., Jansen, C.C., Higgs, S. (2017). Zika virus and Culex quinquefasciatus mosquitoes: a tenuous link. The Lancet Infectious Diseases, 17(10), pp. 1014-1016. PMID: 28948917. {PubMed}

Vanlandingham, D.L., Huang, Y-J. S. & Higgs, S. (2017). Arthropod Vector Biocontainment. In Biological Safety: Principles and Practices, 5th Edition. Am. Soc. Microbiology Press. ISBN 9781555816209

Vignuzzi, M., Higgs, S. (2017). The bridges and blockades to evolutionary convergence on the road to predicting chikungunya virus evolution. Annu Rev Virol 4(1):181-200. PMID: 28961411. {PubMed}

Waide, E.H., Tuggle, C.K., Serao, N.V., Schroyen, M., Hess, A., Rowland, R. R., Lunney, J. K., Plastow, G., Dekkers, J. C. (2017).  Genomewide association of piglet responses to infection with one of two porcine reproductive and respiratory syndrome virus isolates. Journal of Animal Science. 95 (1). pp. 16-38. {PubMed}

Wang, G.L., Valent, B. (2017. Durable resistance to rice blast. Science. 2017 Mar 3;355(6328):906-907. doi: 10.1126/science.aam9517. {PubMed}

Wang, X., Jia, Y., Wamishe, Y., Jia, M. H., Valent, B. (2017). Dynamic changes in the rice blast population in the United States over six decades. Molecular Plant-Microbe Interactions, 30(10), pp. 803-812.

Wells, K.D., Bardot, R., Whitworth, K.M., Trible, B.R., Fang, Y., Mileham, A., Kerrigan, M.A., Samuel, M.S., Prather, R.S., Rowland, R.R. (2017). Replacement of porcine CD163 Scavenger Receptor Cysteine-Rich domain 5 with a CD163-like homolog confers resistance of pigs to genotype 1 but not genotype 2 porcine reproductive and respiratory syndrome virus. J Virol. Jan 3;91(2). Pii:JVI.01521-16. {PubMed}

Yang, J., Lee, J., Ma, J., Lang, y., Nietfeld, J., Li, Y., Duff, M., Li, Y., Yang, Y., Liu, H., Zhou, B., Wentworth, D.E., Richt, J.A., Li, Z., Ma, W. (2017). Pathogenicity of modified bat influenza virus with different M genes and its reassortment potential with swine influenza A virus. J Gen Virol. Apr; 98(4):577-584. Doi: 10.1099/jgv.0.000715 {PubMed}

Yates, H., Chamberlain, B., Norman, G., Hsu, W.H. (2017). Arousal detection for biometric data in built environments using machine learning. Proceedings of Machine Learning Research (PMLR) 66:58-72. {PDF}

Yates, H., Chamberlain, C. (2017). Machine learning and Higher Education. EDUCAUSE Review. December 18, 2017. {online article}

Yates, H. (2017). Affective computing. C2C Digital Magazine (Spring/Summer 2017) by Colleague 2 Colleague. http://scalar.usc.edu/works/c2c-digital-magazine-spring--summer-2017/affective-computing?path=index.

Zhang, B., Mi, S., Bao, F., Guo, H., Tu, C., Shi, J., Gong, W. (2017). Complete genome sequence of a sub-subgenotype 2.1i isolate of classical swine fever virus from China. Genome Announcements 5(14), art. no. e0012717. {PubMed}